Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| SKCM | rs72706611 | chr5:561146 | C/A | 0 | 101 | 15.3 | 13.35 | 6.33 | KM Plot |
| SKCM | rs72706612 | chr5:561198 | C/T | 0 | 101 | 15.3 | 13.35 | 6.33 | KM Plot |
| SKCM | rs727266 | chr12:53356411 | C/T | 4.59E-5 | 101 | 16.58 | 12.68 | 13 | KM Plot |
| SKCM | rs72807961 | chr2:65737735 | T/C | 5.12E-7 | 100 | 15.3 | 13.9 | 8.8 | KM Plot |
| SKCM | rs72807963 | chr2:65738104 | T/C | 5.12E-7 | 100 | 15.3 | 13.9 | 8.8 | KM Plot |
| SKCM | rs72807964 | chr2:65739818 | C/T | 5.12E-7 | 100 | 15.3 | 13.9 | 8.8 | KM Plot |
| SKCM | rs72807966 | chr2:65740720 | T/A | 5.12E-7 | 100 | 15.3 | 13.9 | 8.8 | KM Plot |
| SKCM | rs72807968 | chr2:65745405 | A/T | 5.12E-7 | 100 | 15.3 | 13.9 | 8.8 | KM Plot |
| SKCM | rs72807970 | chr2:65749028 | C/T | 5.12E-7 | 100 | 15.3 | 13.9 | 8.8 | KM Plot |
| SKCM | rs72807972 | chr2:65750421 | T/C | 5.12E-7 | 100 | 15.3 | 13.9 | 8.8 | KM Plot |
| SKCM | rs72808046 | chr2:65727674 | G/A | 5.12E-7 | 100 | 15.3 | 13.9 | 8.8 | KM Plot |
| SKCM | rs72808048 | chr2:65735185 | A/G | 5.12E-7 | 100 | 15.3 | 13.9 | 8.8 | KM Plot |
| SKCM | rs73062531 | chr19:56163704 | C/T | 4.48E-6 | 98 | 14.05 | 21.33 | 9 | KM Plot |
| SKCM | rs73125186 | chr12:63373400 | C/T | 2.4E-7 | 100 | 15.13 | 14.3 | 8.8 | KM Plot |
| SKCM | rs73127067 | chr12:63390333 | G/T | 2.4E-7 | 100 | 15.13 | 14.3 | 8.8 | KM Plot |